PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_140160_fnct.t2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 519aa    MW: 56438.6 Da    PI: 6.0958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_140160_fnct.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09334382355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Bv6_140160_fnct.t2 334 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 382
                         58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-11329386No hitNo description
SuperFamilySSF474596.54E-17329400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16332399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6334382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDMNDKDNSE LEKRNEEPLS YHPHGISADW RYEIPNFVNS SMGLVSSGNN MSVCGDAVGT  60
SCSSGSMVDS FGPTVWEHPV NATSLGFNEM NVHNGASVSD PLSMLKSGLF LPSMSGMLPH  120
SLSQFPADSA FIERAARFSS FSGGHFGDML NHLGVHQSGG PYVRGGEMMQ GPQEVLSGNA  180
FKMLAGRHSQ NREASLAEPS KDVSLPLEHG SREGNSPRNE TPAERSHEET KQGVSVSGND  240
SDEPEFSGGI PQEMTTKDVG AKKRKRGNQD VEAEQDTQQQ SGEARKKNTE TLQKGEQNST  300
PTGNKSNGKH AKQSSDSQKE EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG  360
CSKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD FNIERLLSKD ISQQMLSARA  420
GPSSGLALSP EIPMTYPALH PIQTPGLPGT GNSSDTLRRA ISSQLLNMGG GYKEPALQLP  480
NVWDGELHNI VQMGFNANAP DDNQETNCSV PPSQMKAES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266AKKRKRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681178.10.0PREDICTED: transcription factor bHLH49 isoform X2
TrEMBLA0A0J8C5C90.0A0A0J8C5C9_BETVU; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-117bHLH family protein